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ResearchSeptember 22, 2026

SpecOpt: Contact-Diff Reasoning for Agentic Molecule Optimization Toward Binding Specificity

Off-target protein binding is a major source of adverse effects for small-molecule drugs, yet most structure-based molecular design methods focus on generating selective compounds de novo rather than improving the selectivity of existing, well- characterized drugs. We introduce…

Thao Nguyen, Heng Ji·arXiv — cs.AI
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Key Takeaways
  • 01.Off-target protein binding is a major source of adverse effects for small-molecule drugs, yet most structure-based molecular design methods focus on generating selective compounds de novo rather than improving the selectivity of existing, well- characterized drugs
  • 02.We introduce…

This material is provided as an extended analytical summary.

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