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arXiv — cs.AI

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SpecOpt: Contact-Diff Reasoning for Agentic Molecule Optimization Toward Binding Specificity

Off-target protein binding is a major source of adverse effects for small-molecule drugs, yet most structure-based molecular design methods focus on generating selective compounds de novo rather than improving the selectivity of existing, well- characterized drugs. We introduce…

arXiv — cs.AIBy: Thao Nguyen, Heng JiSeptember 22, 2026 (Sep 22)
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  • Off-target protein binding is a major source of adverse effects for small-molecule drugs, yet most structure-based molecular design methods focus on generating selective compounds de novo rather than improving the selectivity of existing, well- characterized drugs
  • We introduce…
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SpecOpt: Contact-Diff Reasoning for Agentic Molecule Optimization Toward Binding Specificity

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